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Secreted protein signaling pattern

Source: R/downstream.R
SecAct.signaling.pattern.Rd

Calculate the signaling pattern of secreted proteins based on their activities.

Usage

SecAct.signaling.pattern(SpaCET_obj, scale.factor = 1e+05, k = 3)

Arguments

SpaCET_obj

A SpaCET object.

scale.factor

Sets the scale factor for spot-level normalization.

k

Number of patterns for NMF.

Value

A ggplot2 object.

Examples

SpaCET_obj <- SecAct.signaling.pattern(SpaCET_obj, k=3)