Combine interaction spots to interface — SpaCET.combine.interface • SpaCET

Demonstrate the spatial position of interaction spots at the tumor microenvironment.

Usage

SpaCET.combine.interface(SpaCET_obj, cellTypePair)

Arguments

SpaCET_obj: An SpaCET object.
cellTypePair: A pair of cell types.

Value

An SpaCET object.

Examples

SpaCET_obj <- SpaCET.combine.interface(SpaCET_obj,cellTypePair=c("CAF", "Macrophage M2"))
SpaCET.visualize.spatialFeature(SpaCET_obj, spatialType = "Interface", spatialFeature = "Interaction")