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Changelog

Source: NEWS.md

SpaCET 1.4.0

2026-01-01

  • Add a new function SpaCET.SpatialCorrelation to identify spatially variable genes and co-expressed ligand-receptor interactions.
  • Update SpaCET.visualize.spatialFeature to show customized area by setting imageSize = "CustomizedArea" and CustomizedAreaScale.

SpaCET 1.3.0

2025-03-05

  • Add cell references of hepatocytes and cholangiocytes so that SpaCET can infer their fractions when deconvolving liver cancer samples.
  • Update SpaCET.deconvolution to deconvolve normal tissues by settingadjacentNormal = TRUE to skip the malignant cell prediction.
  • Update SpaCET.visualize.spatialFeature to visualize secreted protein signaling activity and pattern.

SpaCET 1.2.0

2024-07-06

  • Add a new function SpaCET.GeneSetScore to calculate gene set score.
  • Update convert.Seurat and addTo.Seurat to be compatible with Seurat v5.

SpaCET 1.1.0

2023-01-30

  • Add an interactive visualization panel to browse the deconvolution and analysis results SpaCET.visualize.spatialFeature(SpaCET_obj,interactive=TRUE).
  • Add a new function to combine both the tumor-immune interface and interaction spots SpaCET.combine.interface().

SpaCET 1.0.0

2022-12-20

  • Release SpaCET package.