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Deconvolve tumor ST data set

Source: R/deconvolution.R
SpaCET.deconvolution.Rd

Estimate the cell fraction of cell lineages and sub lineages.

Usage

SpaCET.deconvolution(
  SpaCET_obj,
  cancerType,
  adjacentNormal = FALSE,
  coreNo = 8
)

Arguments

SpaCET_obj

An SpaCET object.

cancerType

Cancer type of the current tumor ST dataset.

adjacentNormal

Indicate whether your sample is normal tissue adjacent to the tumor. If TURE, SpaCET will skip the stage of malignant cell inference. Default: FALSE.

coreNo

Core number in parallel computation.

Value

An SpaCET object.

Examples

SpaCET_obj <- SpaCET.deconvolution(SpaCET_obj, cancerType="BRCA", coreNo=8)