Explore different malignant cell states in tumor ST dataset.
Usage
SpaCET.deconvolution.malignant(
SpaCET_obj,
Malignant = "Malignant",
malignantCutoff = 0.7,
coreNo = 8
)Arguments
- SpaCET_obj
An SpaCET object.
- Malignant
Indicates the name of malignant cell type in the major lineage layer from the deconvolution results. Default: "Malignant".
- malignantCutoff
Fraction cutoff for defining spots with high abundant malignant cells. Default: 0.7.
- coreNo
Core number in parallel.