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Explore different malignant cell states in tumor ST dataset.

Usage

SpaCET.deconvolution.malignant(
  SpaCET_obj,
  Malignant = "Malignant",
  malignantCutoff = 0.7,
  coreNo = 8
)

Arguments

SpaCET_obj

An SpaCET object.

Malignant

Indicates the name of malignant cell type in the major lineage layer from the deconvolution results. Default: "Malignant".

malignantCutoff

Fraction cutoff for defining spots with high abundant malignant cells. Default: 0.7.

coreNo

Core number in parallel.

Value

An SpaCET object

Examples

SpaCET_obj <- SpaCET.deconvolution.malignant(SpaCET_obj)