Filter spatial spots and calculate the QC metrics — SpaCET.quality.control • SpaCET

Spots with less than `min.genes` expressed genes would be removed.

Usage

SpaCET.quality.control(SpaCET_obj, min.genes = 1)

Arguments

SpaCET_obj: An SpaCET object.
min.genes: Minimum number of expressed genes. Default: 1.

Value

An SpaCET object.

Examples

SpaCET_obj <- SpaCET.quality.control(SpaCET_obj)
SpaCET.visualize.spatialFeature(SpaCET_obj, spatialType = "QualityControl", spatialFeatures=c("UMI","Gene"))