Filter spatial spots and calculate the QC metrics

Spots with less than `min.genes` expressed genes would be removed.

Usage

SpaCET.quality.control(SpaCET_obj, min.genes = 1)

Arguments

SpaCET_obj

A SpaCET object.

min.genes

Minimum number of expressed genes. Default: 1.

Value

A SpaCET object.

Examples

SpaCET_obj <- SpaCET.quality.control(SpaCET_obj, min.genes=100)
SpaCET.visualize.spatialFeature(SpaCET_obj, spatialType = "QualityControl", spatialFeatures=c("UMI","Gene"))